Tree of Codes

Software to analyze nucleotide sequences with respect to specific characteristics.

Nucleotide sequences of all species can be analyzed in summary, based on specific genes, or groups of genes for specific questions, such as GC content, CpG content, risk of acquiring mutations (in particular nonsense mutations). Multiple reference sequence formats and data bases can be used as input, such as NCBI RefSeq, OMIM, dbSNP, etc. Includes mechanisms for splicing and translation to amino acid sequences. Implementation allowed using large datasets with limited memory capacity of notebooks. version 3.2 in VisualBasic.NET (2008-2013).